Metagenomic Binning Using Graph Neural Networks
Constraint-aware graph neural networks for grouping metagenomic sequences.
- Duration: March 2024 – May 2024
- Technologies: Python, PyTorch Geometric
Highlights
- Investigated constraint-based binning for grouping genomes with graph neural networks.
- Experimented with multiple loss functions to demonstrate the importance of incorporating domain constraints into state-of-the-art binning approaches.